Index

A

Action (class in pyctd.manager.models)

actions (pyctd.manager.query.QueryManager attribute) alt_gene_ids (pyctd.manager.models.Gene attribute)

B

biogrid_ids (pyctd.manager.models.Gene attribute)

C

ChemGeneIxn (class in pyctd.manager.models) ChemGeneIxnGeneForm (class in pyctd.manager.models) ChemGeneIxnInteractionAction (class in pyctd.manager.models) ChemGeneIxnPubmed (class in pyctd.manager.models) ChemGoEnriched (class in pyctd.manager.models) Chemical (class in pyctd.manager.models) ChemicalDisease (class in pyctd.manager.models)

ChemicalDiseaseOmim (class in pyctd.manager.models) ChemicalDiseasePubmedid (class in pyctd.manager.models) ChemicalDrugbank (class in pyctd.manager.models) ChemicalParentid (class in pyctd.manager.models) ChemicalParenttreenumber (class in pyctd.manager.models) ChemicalSynonym (class in pyctd.manager.models) ChemicalTreenumber (class in pyctd.manager.models) ChemPathwayEnriched (class in pyctd.manager.models)

D

db_import() (pyctd.manager.database.DbManager method) DbManager (class in pyctd.manager.database) definition (pyctd.manager.models.Disease attribute) direct_evidences (pyctd.manager.query.QueryManager attribute) Disease (class in pyctd.manager.models) disease_id (pyctd.manager.models.Disease attribute)

disease_name (pyctd.manager.models.Disease attribute) DiseaseAltdiseaseid (class in pyctd.manager.models) DiseasePathway (class in pyctd.manager.models) DiseaseSlimmapping (class in pyctd.manager.models) DiseaseSynonym (class in pyctd.manager.models) download_urls() (pyctd.manager.database.DbManager class method)

E

ExposureEvent (class in pyctd.manager.models)

F

foreign_key_to() (in module pyctd.manager.models)

G

Gene (class in pyctd.manager.models) gene_forms (pyctd.manager.query.QueryManager attribute) gene_id (pyctd.manager.models.Gene attribute) gene_name (pyctd.manager.models.Gene attribute) gene_symbol (pyctd.manager.models.Gene attribute) GeneAltGeneId (class in pyctd.manager.models) GeneBiogrid (class in pyctd.manager.models) GeneDisease (class in pyctd.manager.models) GeneDiseaseOmim (class in pyctd.manager.models) GeneDiseasePubmed (class in pyctd.manager.models) GenePathway (class in pyctd.manager.models) GenePharmgkb (class in pyctd.manager.models) GeneSynonym (class in pyctd.manager.models) GeneUniprot (class in pyctd.manager.models) get_action() (pyctd.manager.query.QueryManager method) get_chem_gene_interaction_actions() (pyctd.manager.query.QueryManager method) get_chemical() (pyctd.manager.query.QueryManager method)

get_chemical__by__disease() (pyctd.manager.query.QueryManager method) get_chemical_diseases() (pyctd.manager.query.QueryManager method) get_column_names_from_file() (pyctd.manager.database.DbManager static method) get_disease() (pyctd.manager.query.QueryManager method) get_disease_pathways() (pyctd.manager.query.QueryManager method) get_dtypes() (pyctd.manager.database.DbManager static method) get_gene() (pyctd.manager.query.QueryManager method) get_gene_disease() (pyctd.manager.query.QueryManager method) get_gene_pathways() (pyctd.manager.query.QueryManager method) get_go_enriched__by__chemical_name() (pyctd.manager.query.QueryManager method) get_index_and_columns_order() (pyctd.manager.database.DbManager class method) get_index_of_column() (pyctd.manager.database.DbManager class method) get_marker_chemical__by__disease_name() (pyctd.manager.query.QueryManager method) get_path_to_file_from_url() (pyctd.manager.database.DbManager class method) get_pathway() (pyctd.manager.query.QueryManager method) get_pathway_enriched__by__chemical_name() (pyctd.manager.query.QueryManager method) get_therapeutic_chemical__by__disease_name() (pyctd.manager.query.QueryManager method)

I

import_one_to_many() (pyctd.manager.database.DbManager method) import_table() (pyctd.manager.database.DbManager method)

import_table_in_db() (pyctd.manager.database.DbManager method) import_tables() (pyctd.manager.database.DbManager method) interaction_actions (pyctd.manager.query.QueryManager attribute)

M

mapper (pyctd.manager.database.DbManager attribute)

P

parent_ids (pyctd.manager.models.Disease attribute) parent_tree_numbers (pyctd.manager.models.Disease attribute) Pathway (class in pyctd.manager.models)

pathways (pyctd.manager.query.QueryManager attribute) pharmgkb_ids (pyctd.manager.models.Gene attribute) pyctd.manager.models (module)

Q

QueryManager (class in pyctd.manager.query)

S

synonyms (pyctd.manager.models.Gene attribute)

T

tree_numbers (pyctd.manager.models.Disease attribute)

U

uniprot_ids (pyctd.manager.models.Gene attribute)