Query¶
Examples¶
For most of the string parameters you can use % as wildcard (please check the documentation below). All methods
have a parameter limit which allows to limit the number of results and as_df which allows to return
a pandas.DataFrame.
Methods¶
>>> import pyctd
>>> q = pyctd.query()
>>> q.get_diseases(disease_id='MESH:D000544', definition='%degenerative%')
>>> q.get_genes(gene_symbol='TSP_15922', uniprot_id='E5T972')
>>> q.get_pathways(pathway_name='%bla')
>>> q.get_chemicals(chemical_name='Alz%')
>>> q.get_chem_gene_interaction_action(organism_id='9606', gene_symbol='APP')
>>> q.get_gene__diseases(limit=10)
Properties¶
>>> import pyctd
>>> q = pyctd.query()
>>> q.gene_forms
>>> q.interaction_actions
>>> q.actions
>>> q.pathways